Commit all workspace changes from current session

WORKSPACE_ORGANIZATION_LOG.md

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+# Workspace Organization Log
+
+## 2026-07-04 - Organization Run
+
+### Directories Created
+- docs/ - Documentation files
+- docs/summaries/ - Summary reports
+- docs/inventories/ - Inventory documents
+- docs/plans/ - Plans and strategies
+- scripts/ - Executable scripts
+- scripts/checks/ - Monitoring/check scripts
+- scripts/fixes/ - One-off fix scripts
+- scripts/utils/ - Utility scripts
+- tests/ - Test and debug files
+- runtime/ - Package and state files
+
+### Organization Rules Applied
+- Core config files kept in root (IDENTITY.md, SOUL.md, etc.)
+- Documentation grouped by type
+- Scripts categorized by purpose
+- Test files isolated
+- Runtime files separated
+- Temporary files cleaned
+
+### Notes
+- Run with --dry-run to preview changes
+- Run with --verbose for detailed output